The report container is ready. Please inject JSON
payloads using the processing pipeline.
Total Contigs
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Max Length
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Payload Size
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Note: This is an overview table for the What the
Phage analysis. Please check the results properly.
Hold Shift
+ scroll wheel to scroll the table horizontally.
SM = Sourmash •
GN = geNomad
kn = Known functions
•
hy = Hypothetical/NA
•
un = Unannotated
Contig Overview
Summary across all analyses
Contig
Length
Quality
Completeness
Tool Agreement
Taxonomy
Annotation Status
Raw JSON Payload
Debug
Mode
Select a sample to view data
Contig Quality Summary
CheckV results and viral sequence metrics
Upset Plot - Tool Intersection
Visualization of shared contig identifications across
tools
How to Read This Plot
Interaction
Matrix:The grid of dots at the bottom shows combinations of tools. Connected black dots form an
"intersection" (a specific set of tools that agreed).
Vertical Bars:The height of each bar represents the number of contigs identified exclusively by that specific combination of
tools.
Horizontal Bars:Show the total number of contigs identified by each tool individually (Set
Size), regardless of overlap with other tools.
Phage Identification Overview
P-Values/Scores from all identification tools
Sourmash Hits
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Genomad
Hits
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Combined Taxonomy Findings
Comparison of Sourmash and GeNomad results
Contig
Sourmash Sim.
Sourmash Tax
Genomad Agree.
Genomad Lineage
Sourmash Details
K-mer based taxonomic classification
Contig
Similarity
Accession
Taxonomy
Host
Lifestyle
GeNomad Details
Marker gene based taxonomy
Contig
Agreement
N Genes
TaxID
Lineage
Genome Viewer
Visualizing annotations on contigs
Genome Viewer Features
Compare Mode:Select multiple contigs to visualize them stacked together in the Linear
Viewer.
Circular View:Provides a circular plasmid map of a specific contig generated by a single
specific tool.
Interactive
Legend:Click on any functional category in the legend below to show/hide the gene
labels for that category.
Details on
hover:Hovering over any gene segment on the map will display a popup with exact
locations and details.