Atom

• steps here are described using win10 and a WSL with ubuntu

Important Packages

• markdown-pdf (better protocol prints)
• minimap (shows a script minimap on the right side)
• linter (corrects scripts)
  • and linter-shellcheck
    • need also shellcheck in linux or powershell
  • and linter-python
    • needs pylama installed in python 3
  • and linter-lintr
    • don't install the auto-dependency on win10, go with "atom-language-r"
    • add "C:\Program Files\R\R-3.5.1\bin\R.exe" to path of this package
    • install via R install.packages("lintr")

• remote-atom (edit a remotely located script on your client via atom)

  • you need to start the atom server in atom
  • Packages -> Remote Atom -> Start Server
  • you need to install rmate on the host

  bash curl -o /usr/local/bin/rmate https://raw.githubusercontent.com/aurora/rmate/master/rmate sudo chmod +x /usr/local/bin/rmate mv /usr/local/bin/rmate /usr/local/bin/ratom

  • access host via ssh -R 52698:localhost:52698 name@IP
  • start a remote script like rmate skript.sh
  • you can rename rmate to ratom also for ratom skript.sh

Installing shellcheck

• you need the linter package and the linter-shellcheck package in atom
• then you install shellcheck via scoop into windows directly via powershell
• check the scoop site for scoop installation

# In windows power shell type this:
Set-ExecutionPolicy RemoteSigned -scope CurrentUser

iex (new-object net.webclient).downloadstring('https://get.scoop.sh')`

scoop install shellcheck

• in atom go to the shellcheck package and enter the following path to it

C:\Users\<USERNAME>\scoop\apps\shellcheck\<VERSION>\shellcheck.exe

Installing pylama (corrects python scripts)

• you need to install the linter and linter-python package in atom
• also you need to install pylama in python3

# installing the pip3 from python3.X (not pip from python 2.7)
sudo apt-get install python3-pip ## use the apt-get for now
pip3 install pylama pylama-pylint ## dont use sudo here

• add this path to the settings of linter-python:

C:\Users\<USERNAME>\Documents\Atom_linter_shortcuts\python.bat

• in python.bat write the following line wsl python3 -m pylama